STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_1004TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; KEGG: hch:HCH_04449 predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain. (555 aa)    
Predicted Functional Partners:
Mmc1_3224
Diguanylate phosphodiesterase; PFAM: EAL domain protein; KEGG: eba:ebA3785 phospholipase A2 family protein.
 
    0.803
Mmc1_2304
PFAM: response regulator receiver; KEGG: dar:Daro_0007 response regulator receiver:metal-dependent phosphohydrolase, HD subdomain.
 
 
    0.801
Mmc1_3387
Histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: dar:Daro_3750 PAS:GGDEF.
 
      0.749
Mmc1_1794
PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; SMART: extracellular solute-binding protein, family 3; KEGG: hch:HCH_00309 signal transduction histidine kinase.
 
 
  
 0.716
Mmc1_3390
PFAM: CheB methylesterase; MCP methyltransferase, CheR-type; KEGG: mbu:Mbur_0399 MCP methyltransferase, CheR-type.
 
      0.702
Mmc1_2635
PFAM: CheB methylesterase; KEGG: mag:amb3329 hypothetical 1041 kDa protein in HypE 3'region.
 
      0.701
Mmc1_3408
PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cps:CPS_4164 response regulator/phosphatase.
 
 
  
 0.630
Mmc1_1813
PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO2366 response regulator.
 
 
  
 0.608
Mmc1_3165
PFAM: response regulator receiver; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: son:SO0860 response regulator.
 
 
  
 0.603
Mmc1_2528
PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: sde:Sde_2179 flagellar basal-body rod protein FlgC.
 
    0.601
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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