STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_1010PFAM: YCII-related; KEGG: tbd:Tbd_1530 hypothetical protein. (100 aa)    
Predicted Functional Partners:
Mmc1_3088
PFAM: thioesterase superfamily protein; KEGG: sil:SPO0440 thioesterase family protein.
 
    0.726
hisE
PFAM: phosphoribosyl-ATP pyrophosphohydrolase; KEGG: gsu:GSU3094 phosphoribosyl-ATP pyrophosphohydrolase.
  
    0.554
Mmc1_1009
TIGRFAM: DJ-1 family protein; PFAM: ThiJ/PfpI domain protein; KEGG: tbd:Tbd_1845 putative protease.
     
 0.543
tatA
Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
    0.512
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
  
    0.456
Mmc1_2299
KEGG: rpa:RPA3927 possible phosphoheptose isomerase.
   
    0.449
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
   
    0.449
Mmc1_1011
Hypothetical protein.
       0.434
Mmc1_0083
PFAM: flagellar protein FlaG protein; KEGG: cvi:CV3877 Flagellin protein.
  
     0.404
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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