STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_1020Amino acid/amide ABC transporter membrane protein 1, HAAT family; PFAM: inner-membrane translocator; PBS lyase HEAT domain protein repeat-containing protein; KEGG: sme:SMb20604 putative ureashort-chain amide or branched-chain amino acid uptake ABC transporter permease protein, possibly fusion protein; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family. (548 aa)    
Predicted Functional Partners:
Mmc1_1021
Amino acid/amide ABC transporter membrane protein 2, HAAT family; PFAM: inner-membrane translocator; KEGG: hch:HCH_04516 ABC-type branched-chain amino acid transport system, permease component; TC 3.A.1.4.-.
 
 0.999
Mmc1_1022
PFAM: ABC transporter related; KEGG: hch:HCH_04515 uncharacterized ABC-type transport system, ATPase component.
 
 0.997
Mmc1_1023
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_04514 ABC-type branched-chain amino acid transport system, ATPase component; TC 3.A.1.4.-.
 
 0.997
Mmc1_1019
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; KEGG: hch:HCH_04519 ABC-type branched-chain amino acid transport system, periplasmic component; TC 3.A.1.4.-.
 
 
 0.995
Mmc1_0489
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pae:PA4910 putative branched-chain amino acid transport system ATP-binding protein; TC 3.A.1.4.-.
  
 0.909
ureD
Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
   
 0.892
ureE
UreE urease accessory domain protein; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
 
   
 0.875
ureF
Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
   
 0.828
Mmc1_0488
Amino acid/amide ABC transporter membrane protein 2, HAAT family; PFAM: inner-membrane translocator; KEGG: psb:Psyr_0599 inner-membrane translocator; TC 3.A.1.4.-; Belongs to the binding-protein-dependent transport system permease family.
  
 0.812
ureC
TIGRFAM: urease, alpha subunit; PFAM: amidohydrolase; Urease alpha-subunit domain protein; KEGG: sme:SMc01837 urease alpha subunit protein; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
     
 0.697
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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