STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_1060PFAM: aminoglycoside phosphotransferase; KEGG: bja:blr5425 hypothetical protein. (354 aa)    
Predicted Functional Partners:
Mmc1_1061
KEGG: mag:amb0064 hypothetical protein.
      0.969
Mmc1_1059
PFAM: Transketolase domain protein; KEGG: mag:amb0066 putative transketolase N-terminal section.
       0.784
Mmc1_1062
Cytidyltransferase-related domain; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
       0.780
Mmc1_1058
Transketolase subunit B; PFAM: Transketolase, central region; Transketolase domain protein; KEGG: mag:amb0067 putative transketolase C-terminal section.
       0.719
Mmc1_3556
PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; KEGG: noc:Noc_0826 3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.603
Mmc1_1057
PFAM: Radical SAM domain protein; KEGG: mag:amb0070 predicted Fe-S oxidoreductase.
       0.505
Mmc1_1056
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mag:amb0071 SAM-dependent methyltransferase.
       0.498
Mmc1_1063
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: lil:LA1580 UDP-glucose 4-epimerase.
       0.476
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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