STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_1067PFAM: protein of unknown function DUF461; KEGG: vvu:VV21240 hypothetical protein. (213 aa)    
Predicted Functional Partners:
Mmc1_1066
PFAM: electron transport protein SCO1/SenC; KEGG: mca:MCA1191 SCO1/SenC family protein.
 
   
 0.951
Mmc1_0358
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.931
Mmc1_0357
Cytochrome b/b6, N-terminal domain; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.930
Mmc1_2525
TIGRFAM: Dyp-type peroxidase family; PFAM: Dyp-type peroxidase; KEGG: pae:PA2765 putative iron-dependent peroxidase.
  
    0.774
Mmc1_2355
Cytochrome c oxidase, cbb3-type, subunit III; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
 
 0.610
Mmc1_0168
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
   0.480
Mmc1_0121
Nitric oxide reductase, NorC subunit apoprotein; PFAM: cytochrome c, class I; KEGG: hch:HCH_04411 cytochrome c, mono- and diheme variants.
   
 
 0.459
Mmc1_0315
Hypothetical protein; KEGG: rsp:RSP_2021 mono-heme class I cytochrome c.
   
 
 0.459
Mmc1_0336
KEGG: rba:RB11276 hypothetical protein-transmembrane region and signal peptide prediction.
   
 
 0.459
Mmc1_0553
KEGG: tbd:Tbd_1840 hypothetical protein.
   
 
 0.459
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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