STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_1102Transcriptional regulator, ArsR family; PFAM: Rhodanese domain protein; regulatory protein, ArsR; KEGG: tbd:Tbd_2736 rhodanese-like protein. (228 aa)    
Predicted Functional Partners:
Mmc1_1103
PFAM: DsrE family protein; KEGG: sdy:SDY_1271 hypothetical protein.
  
  
 0.804
Mmc1_1003
Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: sat:SYN_01290 copper-exporting ATPase.
  
  
 0.771
Mmc1_2966
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mlo:mlr3966 arsenate reductase.
  
 
 0.569
Mmc1_1524
PFAM: Rhodanese domain protein; KEGG: tbd:Tbd_0008 rhodanese-like protein.
 
  
 0.555
Mmc1_1105
PFAM: Rhodanese domain protein; KEGG: lpn:lpg0596 hypothetical protein.
 
  
 0.545
Mmc1_2360
KEGG: tcx:Tcr_1960 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; SMART: TRASH domain protein.
  
  
 0.545
Mmc1_0831
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; bacteriophage CI repressor; Cupin 2, conserved barrel domain protein; KEGG: cps:CPS_3286 DNA-binding protein.
 
  
 0.499
Mmc1_0706
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: noc:Noc_1604 glutamate synthase (ferredoxin).
     
 0.473
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
   
 
 0.462
Mmc1_2112
Cache sensor hybrid histidine kinase; PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cvi:CV1579 probable two-component hybrid sensor and regulator.
  
  
 0.460
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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