STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_1109PFAM: type II and III secretion system protein; KEGG: psp:PSPPH_3054 general secretion pathway protein GspD; Belongs to the bacterial secretin family. (802 aa)    
Predicted Functional Partners:
Mmc1_0928
TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; KEGG: bbr:BB0784 putative type II secretion system protein; Belongs to the bacterial secretin family.
 
  
  0.976
Mmc1_3531
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: neu:NE1611 bacterial general secretion pathway protein G.
 
  
 0.821
Mmc1_0931
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: bbr:BB0781 putative type II secretion system protein.
 
  
 0.805
Mmc1_0932
PFAM: type II secretion system protein; KEGG: bbr:BB0780 putative type II secretion system protein.
 
  
 0.797
Mmc1_3567
Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
  
  
 0.685
Mmc1_3142
PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: reu:Reut_B4853 adenylyl cyclase class-3/4/guanylyl cyclase.
  
  
 0.604
Mmc1_0470
Cell division and transport-associated protein TolR; PFAM: Biopolymer transport protein ExbD/TolR; KEGG: gox:GOX1685 ExbD/TolR family protein; TC 2.C.1.2.1.
  
     0.601
Mmc1_0021
Type 4 prepilin peptidase 1, Aspartic peptidase, MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.584
Mmc1_0272
Type III secretion system ATPase, FliI/YscN; KEGG: pca:Pcar_1189 probable flagellum-specific ATP synthase (FliI); TIGRFAM: ATPase, FliI/YscN family; flagellar protein export ATPase FliI; PFAM: H+-transporting two-sector ATPase, alpha/beta subunit, central region; H+-transporting two-sector ATPase, alpha/beta subunit domain protein; SMART: AAA ATPase.
  
  
 0.581
Mmc1_0817
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gsu:GSU1432 TPR domain protein.
  
  
 0.554
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.