STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_1182KEGG: mca:MCA2834 hypothetical protein. (330 aa)    
Predicted Functional Partners:
Mmc1_1179
TIGRFAM: hemerythrin-like metal-binding protein; PFAM: Hemerythrin HHE cation binding domain protein; KEGG: dar:Daro_1420 hypothetical protein.
 
     0.704
Mmc1_1077
PFAM: AAA ATPase, central domain protein; KEGG: mca:MCA0262 ATPase, AAA family.
  
     0.600
Mmc1_1178
Hypothetical protein.
       0.539
Mmc1_1180
PFAM: HpcH/HpaI aldolase; KEGG: tdn:Tmden_1111 HpcH/HpaI aldolase; Belongs to the HpcH/HpaI aldolase family.
       0.539
Mmc1_1181
KEGG: ecj:JW0783 conserved hypothetical protein.
       0.539
Mmc1_1188
PFAM: ferredoxin; KEGG: rpc:RPC_1840 ferredoxin.
  
     0.483
Mmc1_1076
KEGG: mca:MCA1303 glutathione S-transferase.
  
     0.470
Mmc1_1213
KEGG: dar:Daro_1419 hypothetical protein.
  
     0.436
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.