STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_1345Hypothetical protein; KEGG: rso:RSc0879 probable transmembrane protein. (458 aa)    
Predicted Functional Partners:
Mmc1_1343
Hypothetical protein.
       0.773
Mmc1_1344
Hypothetical protein.
       0.773
Mmc1_1346
Hypothetical protein.
       0.773
Mmc1_1339
KEGG: rso:RSc0874 probable transmembrane protein.
       0.752
Mmc1_1340
KEGG: mca:MCA2672 hypothetical protein.
       0.752
Mmc1_1341
Hypothetical protein.
       0.752
Mmc1_1342
Hypothetical protein.
       0.752
Mmc1_1338
TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: sao:SAOUHSC_02182 tail length tape measure protein.
       0.751
Mmc1_1336
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: eba:ebD107 putative phage-like regulator protein.
       0.547
Mmc1_1337
PFAM: protein of unknown function DUF891; KEGG: eba:ebD106 hypothetical protein, phage-related.
       0.547
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.