STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_1413Rod shape-determining protein MreC; Involved in formation and maintenance of cell shape. (307 aa)    
Predicted Functional Partners:
Mmc1_1414
PFAM: Rod shape-determining protein MreD; KEGG: csa:Csal_2238 rod shape-determining protein MreD.
  
 
 0.990
Mmc1_1412
TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: pca:Pcar_1049 rod shape-determining protein MreB.
 
 
 0.988
Mmc1_1415
Peptidoglycan glycosyltransferase; PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: rru:Rru_A0473 peptidoglycan glycosyltransferase.
 
 
 0.977
mrdB
Cell elongation-specific peptidoglycan biosynthesis regulator RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
  
 0.961
Mmc1_2259
KEGG: mag:amb0965 actin-like ATPase.
 
 
 0.850
Mmc1_0257
PFAM: DNA repair protein RadC; KEGG: det:DET1462 DNA repair protein, RadC family; Belongs to the UPF0758 family.
  
  
 0.847
Mmc1_3592
KEGG: rru:Rru_A0746 hypothetical protein.
 
 
 
 0.684
Mmc1_1418
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rba:RB6746 putative methyltransferase.
     
 0.675
Mmc1_1417
TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; KEGG: cya:CYA_1015 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
       0.661
Mmc1_1419
KEGG: hch:HCH_04839 hypothetical protein.
       0.661
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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