STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_1421Membrane protein-like protein; KEGG: son:SO1811 hypothetical protein. (405 aa)    
Predicted Functional Partners:
Mmc1_1420
PFAM: protein of unknown function DUF463, YcjX family protein; KEGG: plu:plu2582 hypothetical protein.
  
 0.993
Mmc1_1414
PFAM: Rod shape-determining protein MreD; KEGG: csa:Csal_2238 rod shape-determining protein MreD.
 
     0.562
Mmc1_1285
KEGG: eci:UTI89_C5091 hypothetical protein.
 
    0.560
Mmc1_3232
PFAM: Thioredoxin domain; KEGG: reu:Reut_A0822 thioredoxin.
   
    0.515
Mmc1_1417
TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; KEGG: cya:CYA_1015 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase.
       0.491
Mmc1_2142
Molybdenum cofactor guanylyltransferase; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor; Belongs to the MobA family.
  
     0.482
Mmc1_1418
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: rba:RB6746 putative methyltransferase.
       0.480
Mmc1_1419
KEGG: hch:HCH_04839 hypothetical protein.
       0.480
Mmc1_2473
KEGG: atc:AGR_C_3474 hypothetical 25.1 kDa protein in CobV 5'region (orf1).
  
     0.459
Mmc1_0778
PFAM: Invasion associated locus B family protein; KEGG: rpa:RPA0830 hypothetical protein.
  
     0.432
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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