STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmdGDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose. (369 aa)    
Predicted Functional Partners:
fcl
NAD-dependent epimerase/dehydratase; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
 0.991
Mmc1_0583
PFAM: sugar transferase; KEGG: tbd:Tbd_0199 putative glycosyltransferase.
  
  
 0.982
Mmc1_0913
KEGG: syf:Synpcc7942_1608 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein.
 
 
 0.965
Mmc1_0612
PFAM: Nucleotidyl transferase; KEGG: mag:amb0798 nucleoside-diphosphate-sugar pyrophosphorylase.
    
 0.912
Mmc1_0563
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: mag:amb0078 predicted pyridoxal phosphate-dependent enzyme; Belongs to the DegT/DnrJ/EryC1 family.
  
 
 0.910
Mmc1_2435
PFAM: NAD-dependent epimerase/dehydratase; KEGG: syn:slr1072 GDP-D-mannose dehydratase.
  
  
 
0.910
Mmc1_2405
PFAM: lipopolysaccharide biosynthesis; KEGG: hch:HCH_04679 chain length determinant protein.
  
  
 0.621
Mmc1_2409
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mag:amb0716 predicted nucleoside-diphosphate sugar epimerase.
  
  
 0.599
Mmc1_1428
PFAM: glycosyl transferase, family 2; KEGG: lic:LIC10452 glycosyltransferase.
  
  
 0.532
Mmc1_1427
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: ade:Adeh_4293 glycosyl transferase, family 2.
     
 0.526
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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