STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_1464PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: mlo:mll5490 peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (536 aa)    
Predicted Functional Partners:
Mmc1_1465
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rme:Rmet_2144 binding-protein-dependent transport systems inner membrane component.
  
 0.996
Mmc1_2154
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: reu:Reut_A2128 binding-protein-dependent transport systems inner membrane component.
  
 0.895
Mmc1_2153
PFAM: extracellular solute-binding protein, family 5; KEGG: rme:Rmet_2146 extracellular solute-binding protein, family 5.
 
  
 0.819
Mmc1_1463
PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: mka:MK0895 Fe-S oxidoreductase.
       0.473
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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