STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hldDADP-glyceromanno-heptose 6-epimerase precursor; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily. (318 aa)    
Predicted Functional Partners:
hldE
D-beta-D-heptose 1-phosphate adenylyltransferase; Catalyzes the phosphorylation of D-glycero-D-manno-heptose 7- phosphate at the C-1 position to selectively form D-glycero-beta-D- manno-heptose-1,7-bisphosphate; In the C-terminal section; belongs to the cytidylyltransferase family.
 
 
 0.993
Mmc1_1552
TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase, family 9; KEGG: mfa:Mfla_0768 lipopolysaccharide heptosyltransferase II.
 
  
 0.956
Mmc1_1550
TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase, family 9; KEGG: pfl:PFL_0512 lipopolysaccharide heptosyltransferase I.
 
  
 0.936
Mmc1_1549
PFAM: glycosyl transferase, family 2; KEGG: dar:Daro_3929 glycosyl transferase, family 2.
 
  
 0.876
Mmc1_1555
D-alpha,beta-D-heptose 1,7-bisphosphate phosphatase; TIGRFAM: histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: bur:Bcep18194_A6030 hypothetical protein.
 
  
 0.865
Mmc1_1551
PFAM: lipid A biosynthesis acyltransferase; KEGG: ade:Adeh_4171 lipid A biosynthesis acyltransferase.
     
 0.796
Mmc1_2415
TIGRFAM: lipopolysaccharide heptosyltransferase III, putative; PFAM: glycosyl transferase, family 9; KEGG: bps:BPSL1123 putative LPS core biosynthesis-related protein.
 
  
 0.710
rpsS
SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.
   
  0.661
Mmc1_2299
KEGG: rpa:RPA3927 possible phosphoheptose isomerase.
 
  
 0.661
rpsZ
SSU ribosomal protein S14P; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site.
   
  0.660
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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