STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_1696KEGG: eli:ELI_14495 hypothetical protein. (132 aa)    
Predicted Functional Partners:
Mmc1_0327
PFAM: 3'-5' exonuclease; KEGG: rbe:RBE_0748 ribonuclease D.
  
     0.714
Mmc1_3611
PFAM: ROSMUCR transcriptional regulator; KEGG: sme:SMc00058 transcription regulator protein.
  
     0.664
Mmc1_2289
PFAM: ROSMUCR transcriptional regulator; KEGG: mlo:mll6260 transcriptional regulator.
  
     0.645
rpsU
TIGRFAM: ribosomal protein S21; KEGG: sme:SMc03934 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
     0.642
Mmc1_2675
PFAM: DNA polymerase III chi subunit, HolC; KEGG: mag:amb3674 DNA polymerase III, chi subunit.
  
     0.623
Mmc1_3475
PFAM: cytochrome c, class I; KEGG: nar:Saro_0468 cytochrome c, class I.
  
     0.583
Mmc1_3474
PFAM: cytochrome c, class I; KEGG: rsp:RSP_2577 isocytochrome c2.
  
     0.541
Mmc1_1658
PFAM: Methyltransferase type 11; KEGG: rpc:RPC_0509 methyltransferase type 11.
  
   
 0.528
Mmc1_1695
PFAM: protein of unknown function DUF423; KEGG: neu:NE1173 hypothetical protein.
       0.510
bamD
DNA uptake lipoprotein-like protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.497
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.