STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_1711PFAM: peptidase U32; KEGG: son:SO1252 peptidase, U32 family. (433 aa)    
Predicted Functional Partners:
Mmc1_0827
PFAM: peptidase U32; KEGG: rfr:Rfer_0135 peptidase U32.
 
 0.862
Mmc1_0026
KEGG: tcx:Tcr_0501 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
    0.618
Mmc1_3493
Putative lipid carrier protein-like protein; KEGG: sme:SMa1289 hypothetical protein.
 
  
 0.595
Mmc1_0742
KEGG: sma:SAV951 dTDP-6-deoxy-L-hexose 3-O-methyltransferase.
  
  
 0.545
Mmc1_3032
Hypothetical protein.
  
  
 0.545
Mmc1_3453
KEGG: cya:CYA_1012 macrocin-O-methyltransferase domain protein.
  
  
 0.545
Mmc1_3663
KEGG: ret:RHE_CH01595 hypothetical protein.
  
  
 0.545
Mmc1_1712
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bxe:Bxe_A0190 TPR repeat protein.
       0.500
Mmc1_1710
Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); KEGG: cvi:CV1033 hypothetical protein; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; response regulator receiver; PAS fold-3 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
       0.486
der
Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
    0.438
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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