STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_1804Putative transmembrane anti-sigma factor. (107 aa)    
Predicted Functional Partners:
Mmc1_1771
RNA polymerase, sigma-24 subunit, RpoE; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: rme:Rmet_2425 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.551
Mmc1_2080
KEGG: dde:Dde_1928 sigma-24 (FecI-like).
  
 
 0.551
Mmc1_2610
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: dde:Dde_1928 sigma-24 (FecI-like).
  
 
 0.551
Mmc1_2658
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: dde:Dde_1928 sigma-24 (FecI-like).
  
 
 0.551
Mmc1_2850
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: dde:Dde_1928 sigma-24 (FecI-like).
  
 
 0.551
Mmc1_3371
RNA polymerase, sigma subunit, ECF family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: bbr:BB1638 putative RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.551
Mmc1_3544
RNA polymerase, sigma-24 subunit, ECF subfamily; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: ccr:CC2751 RNA polymerase sigma-70 factor, ECF subfamily.
  
 
 0.551
Mmc1_1803
PFAM: cyclic nucleotide-binding; KEGG: aor:AO090003000534 cAMP-dependent protein kinase types I and II, regulatory subunit.
       0.403
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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