STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_1971PFAM: Integrase, catalytic region; KEGG: nha:Nham_3914 integrase, catalytic region. (373 aa)    
Predicted Functional Partners:
Mmc1_2721
PFAM: IstB domain protein ATP-binding protein; KEGG: rpc:RPC_3057 IstB-like ATP-binding protein.
  
 0.961
Mmc1_2697
PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: nha:Nham_3913 IstB-like ATP-binding protein.
  
 0.902
Mmc1_2546
KEGG: rme:Rmet_3364 IstB-like ATP-binding protein.
 
  
 0.814
Mmc1_1698
PFAM: UspA domain protein; KEGG: afu:AF1612 cationic amino acid transporter (cat-1).
   
    0.514
Mmc1_2646
Hypothetical protein; KEGG: rha:RHA1_ro08389 transposase.
  
     0.423
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.