STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_2013PFAM: zinc finger, SWIM domain protein; KEGG: gvi:gll2284 hypothetical protein. (608 aa)    
Predicted Functional Partners:
Mmc1_2012
KEGG: vvy:VV1924 hypothetical protein.
       0.678
Mmc1_2014
KEGG: noc:Noc_0660 hypothetical protein.
       0.562
Mmc1_2016
PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: hch:HCH_03805 superfamily II DNA/RNA helicase, SNF2 family.
  
    0.490
Mmc1_2011
KEGG: eba:p1B277 hypothetical protein, probable transposase.
       0.479
Mmc1_0230
Hypothetical protein; KEGG: dps:DP2625 similar to serine/threonine protein phosphatase.
  
     0.436
Mmc1_0998
Putative signal transduction protein; PFAM: HDOD; KEGG: mag:amb2955 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain.
  
     0.419
Mmc1_2015
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: hch:HCH_03804 distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster.
       0.405
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.