STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_2108PFAM: protein of unknown function DUF362; KEGG: sat:SYN_02059 hypothetical cytosolic protein. (332 aa)    
Predicted Functional Partners:
Mmc1_2107
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sat:SYN_02058 4Fe-4S binding protein.
 
     0.957
Mmc1_2110
PFAM: aldo/keto reductase; KEGG: chy:CHY_1118 oxidoreductase, aldo/keto reductase family.
 
     0.776
Mmc1_2109
Hypothetical protein.
       0.773
rpsU
TIGRFAM: ribosomal protein S21; KEGG: sme:SMc03934 30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
     0.503
Mmc1_3710
KEGG: gsu:GSU0536 conserved hypothetical protein TIGR00268.
 
     0.450
Mmc1_1785
PFAM: protein of unknown function DUF111; KEGG: gme:Gmet_0194 hypothetical protein; Belongs to the LarC family.
 
     0.443
Mmc1_0162
KEGG: gme:Gmet_0193 hypothetical protein.
 
     0.437
Mmc1_1590
Periplasmic nitrate reductase subunit NapG; TIGRFAM: MauM/NapG family ferredoxin-type protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dar:Daro_3839 MauM/NapG ferredoxin-type protein.
 
     0.422
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.