STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_2123PFAM: Ankyrin; KEGG: dge:Dgeo_1884 ankyrin. (126 aa)    
Predicted Functional Partners:
Mmc1_0643
PFAM: metallophosphoesterase; KEGG: mca:MCA0159 bis(5'-nucleosyl)-tetraphosphatase, symmetrical.
  
 
 0.679
Mmc1_0230
Hypothetical protein; KEGG: dps:DP2625 similar to serine/threonine protein phosphatase.
  
 
 0.674
Mmc1_1634
Ankyrin repeat-like protein; KEGG: afm:Afu1g01020 hypothetical protein.
  
     0.626
Mmc1_1355
PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: ece:Z5899 putative ATP-dependent helicase.
   
 0.591
Mmc1_2016
PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicases-like; KEGG: hch:HCH_03805 superfamily II DNA/RNA helicase, SNF2 family.
   
 0.591
Mmc1_3477
PFAM: WD-40 repeat protein; peptidase C14, caspase catalytic subunit p20; KEGG: bbr:BB4985 hypothetical protein.
   
 0.580
Mmc1_0288
PFAM: WD-40 repeat protein; protein of unknown function DUF323; KEGG: dps:DP2422 hypothetical protein.
  
 0.573
Mmc1_0890
PFAM: WD-40 repeat protein; KEGG: rru:Rru_A0868 peptidase C14, caspase catalytic subunit P20.
    
 0.556
Mmc1_3709
PFAM: Mov34/MPN/PAD-1 family protein; KEGG: noc:Noc_0361 metal-dependent protease of the PAD1/JAB1 superfamily.
    
 0.550
Mmc1_2252
PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ddi:DDB0216612 hypothetical protein.
  
 0.527
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.