STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_2181PFAM: SapC family protein; KEGG: sil:SPO2717 SapC protein, putative. (240 aa)    
Predicted Functional Partners:
Mmc1_2177
KEGG: sil:SPO2715 GAF domain protein.
 
     0.682
Mmc1_2176
KEGG: nmu:Nmul_A0925 peptidase, M50 family.
 
     0.617
Mmc1_2180
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: mfa:Mfla_2534 type I secretion outer membrane protein, TolC.
 
     0.590
Mmc1_2174
KEGG: nmu:Nmul_A0923 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.561
Mmc1_2179
TIGRFAM: putative outer membrane adhesin like proteiin; PFAM: Hemolysin-type calcium-binding region; pentapeptide repeat protein; TMP repeat-containing protein; KEGG: mag:amb1268 large exoprotein.
 
    0.548
Mmc1_2199
KEGG: cch:Cag_1408 membrane-fusion protein-like.
 
     0.534
Mmc1_2172
TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; KEGG: dps:DPPB56 hypothetical protein.
 
     0.460
Mmc1_2196
PFAM: Hemolysin-type calcium-binding region; glycosyl hydrolase, BNR repeat-containing protein; Haemagluttinin repeat-containing protein; KEGG: cch:Cag_0616 parallel beta-helix repeat.
  
     0.451
Mmc1_2198
PFAM: peptidase M50; KEGG: cch:Cag_1407 peptidase, M50 family.
 
     0.444
Mmc1_2173
PFAM: Polypeptide-transport-associated domain protein, ShlB-type; KEGG: psp:PSPPH_0780 outer membrane protein, OMP85 family, putative.
 
     0.424
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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