STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_2200PFAM: secretion protein HlyD family protein; KEGG: cch:Cag_1409 membrane-fusion protein-like; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (274 aa)    
Predicted Functional Partners:
Mmc1_2201
PFAM: outer membrane efflux protein; KEGG: cch:Cag_0615 outer membrane protein-like.
 
 
 0.913
Mmc1_2199
KEGG: cch:Cag_1408 membrane-fusion protein-like.
 
    0.862
Mmc1_2198
PFAM: peptidase M50; KEGG: cch:Cag_1407 peptidase, M50 family.
 
    0.824
secA2
SecA DEAD domain protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
       0.773
Mmc1_2202
PFAM: SapC family protein; KEGG: cch:Cag_0613 SapC-related protein.
 
     0.682
Mmc1_0546
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: sdn:Sden_0381 type I secretion outer membrane protein, TolC.
 
 
 0.665
Mmc1_2990
PFAM: outer membrane efflux protein; KEGG: mag:amb3157 outer membrane protein.
  
 
 0.605
Mmc1_0722
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: rru:Rru_A1798 type I secretion outer membrane protein, TolC.
  
 
 0.597
Mmc1_0979
PFAM: outer membrane efflux protein; KEGG: neu:NE0036 outer membrane efflux protein.
  
 
 0.597
Mmc1_2180
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: mfa:Mfla_2534 type I secretion outer membrane protein, TolC.
  
 
 0.597
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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