STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_2201PFAM: outer membrane efflux protein; KEGG: cch:Cag_0615 outer membrane protein-like. (587 aa)    
Predicted Functional Partners:
Mmc1_2199
KEGG: cch:Cag_1408 membrane-fusion protein-like.
 
   0.936
Mmc1_2198
PFAM: peptidase M50; KEGG: cch:Cag_1407 peptidase, M50 family.
 
   0.931
Mmc1_2200
PFAM: secretion protein HlyD family protein; KEGG: cch:Cag_1409 membrane-fusion protein-like; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.913
Mmc1_2196
PFAM: Hemolysin-type calcium-binding region; glycosyl hydrolase, BNR repeat-containing protein; Haemagluttinin repeat-containing protein; KEGG: cch:Cag_0616 parallel beta-helix repeat.
 
  
 0.804
secA2
SecA DEAD domain protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.
 
   
 0.802
Mmc1_2202
PFAM: SapC family protein; KEGG: cch:Cag_0613 SapC-related protein.
 
     0.701
Mmc1_2524
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: eba:ebA7103 putative HlyD-like secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.673
Mmc1_3187
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: vvu:VV21321 membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.630
Mmc1_2177
KEGG: sil:SPO2715 GAF domain protein.
 
   0.572
Mmc1_0547
TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: eca:ECA3269 HlyD family secretion protein.
  
 
 0.553
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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