STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_2252PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ddi:DDB0216612 hypothetical protein. (1022 aa)    
Predicted Functional Partners:
Mmc1_2253
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mag:amb0971 TPR repeat.
 
 
0.705
Mmc1_2250
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mag:amb1007 predicted Co/Zn/Cd cation transporters; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
 
    0.676
Mmc1_2255
PFAM: protein of unknown function DUF81; KEGG: mag:amb0969 trypsin-like serine protease.
   
 0.676
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.663
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
   
 0.659
Mmc1_2254
KEGG: mag:amb0970 hypothetical protein.
   
 0.654
Mmc1_2251
PFAM: LemA family protein; KEGG: mag:amb1005 hypothetical protein.
     
 0.633
Mmc1_2256
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mag:amb0967 predicted Co/Zn/Cd cation transporters; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
  
    0.577
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.560
Mmc1_3477
PFAM: WD-40 repeat protein; peptidase C14, caspase catalytic subunit p20; KEGG: bbr:BB4985 hypothetical protein.
  
 0.545
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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