STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_2258KEGG: mag:amb0957 hypothetical protein. (108 aa)    
Predicted Functional Partners:
Mmc1_2257
Hypothetical protein.
       0.651
Mmc1_2255
PFAM: protein of unknown function DUF81; KEGG: mag:amb0969 trypsin-like serine protease.
     
 0.646
Mmc1_2259
KEGG: mag:amb0965 actin-like ATPase.
     
 0.554
Mmc1_2256
TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: mag:amb0967 predicted Co/Zn/Cd cation transporters; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
     
 0.501
Mmc1_2254
KEGG: mag:amb0970 hypothetical protein.
     
 0.476
Mmc1_2253
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mag:amb0971 TPR repeat.
       0.423
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.