STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_2272TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: csa:Csal_1814 amino acid carrier protein. (448 aa)    
Predicted Functional Partners:
Mmc1_2271
Hypothetical protein; KEGG: gsu:GSU1032 methyl-accepting chemotaxis protein.
       0.768
Mmc1_3482
PFAM: CBS domain containing protein; Cl- channel, voltage-gated family protein; KEGG: dde:Dde_0310 CBS.
  
    0.569
psd
Phosphatidylserine decarboxylase related protein; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
      0.538
Mmc1_2273
Hypothetical protein.
       0.511
Mmc1_2270
KEGG: mag:amb0400 hypothetical protein.
       0.510
Mmc1_1697
TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: sth:STH127 sodium-dependent transporter.
  
    0.493
Mmc1_0897
KEGG: rru:Rru_A1600 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; Belongs to the citrate synthase family.
   
  
 0.482
Mmc1_3687
Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
  
    0.432
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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