STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_2291TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: noc:Noc_2718 HAD-superfamily hydrolase subfamily IIB. (264 aa)    
Predicted Functional Partners:
Mmc1_3514
PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; KEGG: tcx:Tcr_1797 alpha amylase, catalytic region.
 
  
 0.978
Mmc1_3516
KEGG: syn:sll0045 sucrose phosphate synthase; TIGRFAM: sucrose-phosphate synthase; PFAM: glycosyl transferase, group 1; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3.
 
  
0.933
Mmc1_3515
TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; KEGG: noc:Noc_2718 HAD-superfamily hydrolase subfamily IIB.
  
  
 
0.914
Mmc1_1349
KEGG: rpd:RPD_0957 hypothetical protein.
  
     0.581
Mmc1_2023
KEGG: rpd:RPD_0957 hypothetical protein.
  
     0.581
Mmc1_2292
PFAM: Endonuclease/exonuclease/phosphatase.
       0.502
Mmc1_0168
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.418
Mmc1_1731
Transcriptional regulator, ModE family; TIGRFAM: molybdate transport repressor, ModE; PFAM: regulatory protein, LysR; TOBE domain protein; KEGG: mag:amb2949 molybdenum-pterin binding protein MopA.
      
 0.405
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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