STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_2410PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ccr:CC0234 flagellin modification protein FlmB; Belongs to the DegT/DnrJ/EryC1 family. (401 aa)    
Predicted Functional Partners:
Mmc1_2409
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: mag:amb0716 predicted nucleoside-diphosphate sugar epimerase.
 
 0.996
Mmc1_0583
PFAM: sugar transferase; KEGG: tbd:Tbd_0199 putative glycosyltransferase.
 
  
 0.897
Mmc1_2407
N-acetylneuraminate synthase; PFAM: GCN5-related N-acetyltransferase; N-acetylneuraminic acid synthase, N-terminal domain; SAF domain; KEGG: bsu:BG10613 spore coat polysaccharide biosynthesis protein spsE.
 
  
 0.785
Mmc1_1494
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: aba:Acid345_1079 oxidoreductase.
  
 0.646
Mmc1_1405
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: plu:plu4658 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.630
Mmc1_1853
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: pca:Pcar_1256 oxidoreductase, Gfo/Idh/MocA family.
  
 0.597
Mmc1_0560
Nucleotidyl transferase; PFAM: CBS domain containing protein; Nucleotidyl transferase; KEGG: sru:SRU_0607 putative mannose-1-phosphate guanyltransferase.
  
 
 0.589
Mmc1_0587
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: dar:Daro_2402 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.570
Mmc1_0561
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: ilo:IL0550 UDP-N-acetylglucosamine 2-epimerase.
  
  
 0.556
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
  
  
 0.528
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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