STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_2425PFAM: PP-loop domain protein; KEGG: pae:PA3150 LPS biosynthesis protein WbpG. (412 aa)    
Predicted Functional Partners:
Mmc1_2421
Imidazole glycerol phosphate synthase subunit hisF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
 
 0.893
hisH
Imidazole glycerol phosphate synthase subunit hisH; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.
 
  
 0.798
Mmc1_2424
PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; KEGG: cvi:CV4127 probable dehydrogenase.
 
  
 0.785
Mmc1_0587
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: dar:Daro_2402 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
 
  
 0.751
Mmc1_2423
Acetyltransferase; KEGG: eli:ELI_13350 acetyltransferase.
 
 
   0.718
Mmc1_2422
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: eli:ELI_13355 putative aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
  
    0.684
Mmc1_2426
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mhu:Mhun_3088 ABC transporter related.
     
 0.637
Mmc1_0922
PFAM: glycosyl transferase, family 4; KEGG: mca:MCA1133 undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase, putative.
  
    0.583
Mmc1_1493
PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: bbr:BB0876 polysaccharide biosynthesis protein.
  
  
 0.570
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
  
 0.553
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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