STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_2497KEGG: mag:amb1644 Ni,Fe-hydrogenase I large subunit. (379 aa)    
Predicted Functional Partners:
Mmc1_2494
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: rfr:Rfer_4120 uptake hydrogenase accessory protein HupU.
 
 0.999
Mmc1_2506
KEGG: mag:amb1650 Ni,Fe-hydrogenase I small subunit; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein.
 
 0.995
Mmc1_2495
PAS/PAC sensor signal transduction histidine kinase; KEGG: bja:bll6924 two-component hybrid sensor and regulator; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
  
 0.993
Mmc1_2493
PFAM: nickel-dependent hydrogenase, large subunit; KEGG: dar:Daro_3960 nickel-dependent hydrogenase, large subunit.
 
  
 
0.984
Mmc1_2503
PFAM: nickel-dependent hydrogenase, large subunit; KEGG: mag:amb1647 Ni,Fe-hydrogenase I large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
  
  0.977
Mmc1_2498
Hypothetical protein; KEGG: mag:amb2662 hydrogenase expression/formation protein HupT.
 
  
 0.958
Mmc1_1742
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; thiamine pyrophosphate enzyme domain protein TPP-binding; KEGG: rpb:RPB_0851 pyruvate flavodoxin/ferredoxin oxidoreductase.
   
 
 0.935
Mmc1_2156
KEGG: cte:CT2249 sulfite reductase, dissimilatory-type, alpha subunit; TIGRFAM: sulfite reductase, dissimilatory-type alpha subunit; PFAM: nitrite and sulphite reductase 4Fe-4S region.
  
  
 0.914
Mmc1_2157
KEGG: cch:Cag_1955 sulfite reductase, dissimilatory-type beta subunit; TIGRFAM: sulfite reductase, dissimilatory-type beta subunit; PFAM: nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin domain protein; nitrite and sulphite reductase 4Fe-4S region.
  
  
 0.914
Mmc1_2496
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: dar:Daro_3962 helix-turn-helix, fis-type.
 
   
 0.904
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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