STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_2504PFAM: Polysulphide reductase, NrfD; KEGG: mag:amb1648 polysulphide reductase. (382 aa)    
Predicted Functional Partners:
Mmc1_2505
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: rfr:Rfer_4089 twin-arginine translocation pathway signal.
 
 0.988
Mmc1_2506
KEGG: mag:amb1650 Ni,Fe-hydrogenase I small subunit; TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein.
 
  
 0.957
Mmc1_2503
PFAM: nickel-dependent hydrogenase, large subunit; KEGG: mag:amb1647 Ni,Fe-hydrogenase I large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
  
 0.940
Mmc1_2502
Hydrogenase 2 maturation peptidase, Aspartic peptidase, MEROPS family A31; TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52, hydrogen uptake protein; KEGG: eci:UTI89_C3415 hydrogenase 2 maturation protease.
 
  
 0.853
Mmc1_1590
Periplasmic nitrate reductase subunit NapG; TIGRFAM: MauM/NapG family ferredoxin-type protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dar:Daro_3839 MauM/NapG ferredoxin-type protein.
 
 
 0.813
Mmc1_1708
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mag:amb3377 Fe-S-cluster-containing hydrogenase components 1.
 
 
 0.800
Mmc1_1800
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: mag:amb3542 Fe-S-cluster-containing hydrogenase components 1.
 
 0.776
Mmc1_1432
Pyruvate kinase; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate kinase; HpcH/HpaI aldolase; KEGG: ade:Adeh_4234 pyruvate kinase; Belongs to the pyruvate kinase family.
  
 
 0.717
napA
Periplasmic nitrate reductase subunit NapA apoprotein; Catalytic subunit of the periplasmic nitrate reductase complex NapAB. Receives electrons from NapB and catalyzes the reduction of nitrate to nitrite.
 
 
 0.683
Mmc1_1580
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: dsy:DSY4014 putative anaerobic dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 
 0.661
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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