STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_2709PFAM: sigma-54 factor, interaction domain-containing protein; Helix-turn-helix, type 11 domain protein; SMART: AAA ATPase; KEGG: xoo:XOO4202 two-component system regulatory protein. (398 aa)    
Predicted Functional Partners:
Mmc1_3334
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.799
Mmc1_0134
Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification.
  
  
 0.780
Mmc1_0132
PFAM: restriction modification system DNA specificity domain; KEGG: sab:SAB0265 type-I specificity determinant subunit.
  
    0.740
Mmc1_1679
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: eba:ebA4399 predicted peroxiredoxin.
  
  
 0.690
Mmc1_2112
Cache sensor hybrid histidine kinase; PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cvi:CV1579 probable two-component hybrid sensor and regulator.
  
 
 0.658
Mmc1_1019
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; KEGG: hch:HCH_04519 ABC-type branched-chain amino acid transport system, periplasmic component; TC 3.A.1.4.-.
      0.654
fur
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: eba:ebB167 ferric uptake regulation protein (ferric uptake regulator); Belongs to the Fur family.
  
  
 0.639
Mmc1_3182
KEGG: rpb:RPB_0524 putative ferric uptake regulator, FUR family; Belongs to the Fur family.
  
  
 0.639
Mmc1_0233
Cyclic nucleotide-binding protein; KEGG: mag:amb1535 response regulator containing a CheY-like receiver domain and a GGDEF domain; TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; cyclic nucleotide-binding; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 0.598
Mmc1_2107
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: sat:SYN_02058 4Fe-4S binding protein.
  
 
 0.538
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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