STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_2829PFAM: plasmid stabilization system; KEGG: rru:Rru_A2376 hypothetical protein. (102 aa)    
Predicted Functional Partners:
Mmc1_2828
Putative transcriptional regulator, CopG/Arc/MetJ family; TIGRFAM: putative addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: rru:Rru_A2377 predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain.
  
 
 0.866
Mmc1_2827
SMART: HNH nuclease; KEGG: pca:Pcar_2805 hypothetical protein.
       0.532
Mmc1_1315
Putative transcriptional regulator, CopG/Arc/MetJ family; TIGRFAM: putative addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: rru:Rru_A2377 predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain.
  
 
 0.432
Mmc1_2058
Putative transcriptional regulator, CopG/Arc/MetJ family; TIGRFAM: putative addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: rru:Rru_A2377 predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain.
  
 
 0.432
Mmc1_2756
Putative transcriptional regulator, CopG/Arc/MetJ family; TIGRFAM: putative addiction module antidote protein, CC2985 family; PFAM: protein of unknown function UPF0156; KEGG: rru:Rru_A2377 predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain.
  
 
 0.432
Mmc1_2575
TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: sat:SYN_02228 DNA -damage-inducible protein J.
   
   0.414
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.