STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_2898KEGG: mag:amb1170 hypothetical protein. (71 aa)    
Predicted Functional Partners:
Mmc1_2897
TIGRFAM: phage portal protein, lambda family; PFAM: phage portal protein, lambda; KEGG: mca:MCA2660 prophage LambdaMc01, portal protein, lambda family.
       0.773
Mmc1_2899
PFAM: phage terminase GpA; KEGG: bhe:BH03350 phage terminase large subunit (GP15).
       0.773
Mmc1_2900
KEGG: wol:WD0264 hypothetical protein.
       0.773
Mmc1_2901
Hypothetical protein.
       0.546
Mmc1_2902
KEGG: mag:amb1166 hypothetical protein.
       0.532
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.