STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_2913KEGG: mag:amb0360 hypothetical protein. (72 aa)    
Predicted Functional Partners:
Mmc1_2912
KEGG: rso:RS03910 hypothetical protein.
       0.777
Mmc1_2914
KEGG: mag:amb0359 hypothetical protein.
       0.777
Mmc1_2911
PFAM: Peptidase M15A; KEGG: sil:SPO3675 hypothetical protein.
       0.428
Mmc1_2915
KEGG: mag:amb0358 hypothetical protein.
       0.422
Mmc1_2918
KEGG: mag:amb0355 hypothetical protein.
       0.403
Mmc1_2917
PFAM: helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; KEGG: mag:amb0356 DNA or RNA helicase of superfamily II.
       0.400
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.