STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_2967PFAM: peptidase M48, Ste24p; KEGG: dar:Daro_0246 peptidase M48, Ste24p. (453 aa)    
Predicted Functional Partners:
Mmc1_2968
PFAM: pseudouridine synthase; KEGG: rpc:RPC_0213 pseudouridine synthase.
       0.773
Mmc1_3510
PFAM: peptidase M23B; KEGG: csa:Csal_0045 peptidase M23B.
 
 
   0.543
Mmc1_2966
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: mlo:mlr3966 arsenate reductase.
     
 0.407
Mmc1_2524
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: eba:ebA7103 putative HlyD-like secretion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.400
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.