STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_3003KEGG: dar:Daro_3162 putative lipoprotein. (256 aa)    
Predicted Functional Partners:
Mmc1_3002
PFAM: VacJ family lipoprotein; KEGG: pca:Pcar_0450 surface lipoprotein-like.
       0.693
Mmc1_3004
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: mfa:Mfla_0499 tetratricopeptide TPR_2.
 
     0.612
Mmc1_1360
PFAM: response regulator receiver; KEGG: pca:Pcar_2629 response regulator receiver domain protein (CheY-like).
  
     0.608
Mmc1_2683
KEGG: pca:Pcar_0582 hypothetical protein.
  
     0.573
Mmc1_3005
ErfK/YbiS/YcfS/YnhG; KEGG: nmu:Nmul_A1883 ErfK/YbiS/YcfS/YnhG.
 
     0.516
Mmc1_1288
PFAM: response regulator receiver; KEGG: pca:Pcar_2629 response regulator receiver domain protein (CheY-like).
  
     0.502
Mmc1_2713
PFAM: response regulator receiver; KEGG: pca:Pcar_2629 response regulator receiver domain protein (CheY-like).
  
     0.493
Mmc1_1407
KEGG: hch:HCH_04968 hypothetical protein.
  
     0.484
Mmc1_3043
PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; KEGG: eba:ebA1383 putative MFS permease.
  
     0.459
Mmc1_0538
KEGG: cps:CPS_1654 hypothetical protein.
  
     0.447
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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