STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_3090PFAM: glycosyl transferase, group 1; KEGG: msu:MS1496 RfaG protein. (440 aa)    
Predicted Functional Partners:
Mmc1_3089
Hypothetical protein.
       0.773
Mmc1_0171
PFAM: glycosyl transferase, group 1; KEGG: mac:MA4452 glycosyltransferase (group I).
  
     0.733
Mmc1_0583
PFAM: sugar transferase; KEGG: tbd:Tbd_0199 putative glycosyltransferase.
 
  
 0.680
Mmc1_3091
PFAM: ExsB family protein; PP-loop domain protein; KEGG: eli:ELI_13315 putative LPS biosynthesis protein WbpG.
  
    0.642
Mmc1_1156
PFAM: glycosyl transferase, group 1; KEGG: bxe:Bxe_B2250 putative glycosyltransferase.
  
     0.573
Mmc1_1546
PFAM: glycosyl transferase, group 1; KEGG: plu:plu4852 lipopolysaccharide core biosynthesis protein RfaG (glucosyltransferase I).
  
     0.525
Mmc1_0333
PFAM: UDP-glucose/GDP-mannose dehydrogenase; KEGG: rru:Rru_A2116 UDP-glucose 6-dehydrogenase.
  
  
 0.457
Mmc1_1405
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KEGG: plu:plu4658 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.440
Mmc1_2420
PFAM: glycosyl transferase, group 1; KEGG: fra:Francci3_1293 glycosyl transferase, group 1.
  
     0.432
Mmc1_2443
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.431
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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