STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_3095PFAM: Anti-sigma-28 factor, FlgM family protein; KEGG: dde:Dde_0638 putative anti-sigma-28 factor, FlgM. (110 aa)    
Predicted Functional Partners:
Mmc1_0152
PFAM: Sulfate transporter/antisigma-factor antagonist STAS.
     
  0.900
Mmc1_0196
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: psb:Psyr_3452 sulfate transporter/antisigma-factor antagonist STAS.
     
  0.900
Mmc1_0411
Hypothetical protein; KEGG: psb:Psyr_3452 sulfate transporter/antisigma-factor antagonist STAS.
     
  0.900
Mmc1_0440
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: ppu:PP4364 anti-sigma F factor antagonist, putative.
     
  0.900
Mmc1_0945
KEGG: ilo:IL1714 anti-anti-sigma regulatory factor.
     
  0.900
Mmc1_0946
KEGG: ppu:PP4364 anti-sigma F factor antagonist, putative.
     
  0.900
Mmc1_2094
PFAM: Sulfate transporter/antisigma-factor antagonist STAS.
     
  0.900
Mmc1_2188
PFAM: Sulfate transporter/antisigma-factor antagonist STAS.
     
  0.900
Mmc1_2957
PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: pae:PA3347 hypothetical protein.
     
  0.900
Mmc1_3037
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: lic:LIC11380 RNA polymerase sigma-28 factor.
     
  0.900
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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