STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_3141KEGG: rpc:RPC_1958 hypothetical protein. (266 aa)    
Predicted Functional Partners:
Mmc1_3140
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: rpc:RPC_1959 cobalamin (vitamin B12) biosynthesis CbiM protein.
  
 0.993
Mmc1_3139
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: mag:amb4337 ABC-type cobalt transport system, permease component CbiQ and related transporters.
 
  
 0.991
Mmc1_3138
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mag:amb4338 ABC-type cobalt transport system, ATPase component.
 
  
 0.989
Mmc1_3137
PFAM: Cobyrinic acid a,c-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: mca:MCA2290 cobyrinic acid a,c-diamide synthase.
       0.762
Mmc1_3135
PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: mca:MCA2299 CbiX protein.
       0.719
Mmc1_3136
TIGRFAM: precorrin-4 C11-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mca:MCA2300 precorrin-4 C11-methyltransferase.
       0.716
Mmc1_0237
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
  
    0.560
Mmc1_0877
KEGG: rfr:Rfer_3635 cytochrome c family protein.
  
     0.542
Mmc1_3044
PFAM: major facilitator superfamily MFS_1; KEGG: sme:SMa1641 probable NreB protein.
 
     0.497
Mmc1_3132
TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit; KEGG: mca:MCA2296 precorrin-6Y C5,15-methyltransferase (decarboxylating).
       0.497
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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