STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_3143SMART: protein phosphatase 2C domain protein; KEGG: ade:Adeh_3691 serine/threonine phosphatase. (265 aa)    
Predicted Functional Partners:
Mmc1_1921
PFAM: protein kinase; protein of unknown function DUF323; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: bte:BTH_II0256 serine/threonine protein kinase.
 
 
 0.923
Mmc1_3711
PFAM: protein kinase; Sporulation domain protein; SMART: serine/threonine protein kinase; KEGG: mpa:MAP1049c PknE.
 
 
 0.900
Mmc1_3142
PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: reu:Reut_B4853 adenylyl cyclase class-3/4/guanylyl cyclase.
 
 
 0.894
Mmc1_3359
PFAM: protein kinase; Sel1 domain protein repeat-containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: tbd:Tbd_0475 serine/threonine protein kinase.
 
 
 0.877
Mmc1_3360
PFAM: protein kinase; Sel1 domain protein repeat-containing protein; SMART: serine/threonine protein kinase; KEGG: bte:BTH_II0256 serine/threonine protein kinase.
 
 
 0.846
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
   
 0.805
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
   0.799
Mmc1_2590
KEGG: cte:CT0220 hypothetical protein.
  
   0.799
Mmc1_0937
PFAM: protein kinase; Sel1 domain protein repeat-containing protein; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: nmu:Nmul_A0104 Sel1-like repeat.
 
 
 0.771
Mmc1_2396
2-oxoglutarate dehydrogenase E2 component; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2).
   
 0.767
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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