STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_3183PFAM: periplasmic solute binding protein; KEGG: atc:AGR_C_2805 putative adhesin. (371 aa)    
Predicted Functional Partners:
znuC
ABC transporter related protein; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.
 
 
 0.997
Mmc1_3180
PFAM: ABC-3 protein; KEGG: bmb:BruAb2_1061 ZnuB, zinc ABC transporter, permease protein.
 
 
 0.992
Mmc1_3182
KEGG: rpb:RPB_0524 putative ferric uptake regulator, FUR family; Belongs to the Fur family.
 
  
 0.813
Mmc1_3179
PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; KEGG: mfa:Mfla_1229 cobalamin synthesis protein, P47K.
  
  
 0.606
Mmc1_3506
PFAM: peptidase M23B; KEGG: hch:HCH_06239 membrane protein related to metalloendopeptidase.
 
  
 0.478
Mmc1_1051
PFAM: peptidase M23B; KEGG: noc:Noc_2436 peptidase M23B.
  
  
 0.476
Mmc1_1955
PFAM: peptidase M23B; KEGG: tdn:Tmden_1568 peptidase M23B.
  
  
 0.476
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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