STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_3259TIGRFAM: pilus (MSHA type) biogenesis protein MshL; PFAM: type II and III secretion system protein; KEGG: tbd:Tbd_0549 putative type II secretory pathway component PulD; Belongs to the bacterial secretin family. (830 aa)    
Predicted Functional Partners:
Mmc1_3596
KEGG: tcx:Tcr_0469 hypothetical protein.
 
  
 0.800
Mmc1_0933
KEGG: bbr:BB0790 putative type II secretion system protein.
 
  
 0.729
Mmc1_3142
PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: reu:Reut_B4853 adenylyl cyclase class-3/4/guanylyl cyclase.
 
  
 0.693
Mmc1_0931
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; KEGG: bbr:BB0781 putative type II secretion system protein.
 
  
 0.672
Mmc1_0932
PFAM: type II secretion system protein; KEGG: bbr:BB0780 putative type II secretion system protein.
 
  
 0.658
Mmc1_3531
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: neu:NE1611 bacterial general secretion pathway protein G.
 
  
 0.635
Mmc1_1609
Pilus retraction ATPase PilT; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: mca:MCA1537 twitching motility protein PilT.
 
   
 0.602
Mmc1_0817
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: gsu:GSU1432 TPR domain protein.
  
  
 0.554
Mmc1_1114
KEGG: mfa:Mfla_1126 hypothetical protein.
 
    0.514
Mmc1_1858
PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; CHASE2 domain protein; KEGG: mfa:Mfla_2129 adenylate/guanylate cyclase.
  
     0.514
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.