STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_3470PFAM: protein of unknown function UPF0118; KEGG: vch:VC2162 permease PerM, putative. (362 aa)    
Predicted Functional Partners:
Mmc1_3469
PFAM: Fmu (Sun) domain protein; KEGG: mfa:Mfla_0208 Fmu (Sun); Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
     
 0.798
purH
IMP cyclohydrolase / phosphoribosylaminoimidazolecarboxamide formyltransferase; KEGG: gsu:GSU0609 phosphoribosylaminoimidazolecarboxamide formyltransferase.
       0.737
Mmc1_3471
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: pcr:Pcryo_1862 ErfK/YbiS/YcfS/YnhG.
  
  
 0.559
Mmc1_3472
PFAM: protein of unknown function UPF0005; KEGG: eba:ebA4143 hypothetical protein; Belongs to the BI1 family.
       0.523
recF
DNA replication and repair protein RecF; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP.
  
     0.495
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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