STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_3539PFAM: metallophosphoesterase; KEGG: bur:Bcep18194_C6632 metallophosphoesterase. (404 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.990
Mmc1_3265
ATPase involved in DNA repair-like protein; KEGG: ana:alr3988 exonuclease SbcC.
  
 0.983
Mmc1_1338
TIGRFAM: phage tail tape measure protein, TP901 family; KEGG: sao:SAOUHSC_02182 tail length tape measure protein.
  
 0.969
Mmc1_3540
KEGG: cch:Cag_1092 hypothetical protein.
 
 
 0.956
Mmc1_1358
KEGG: plu:plu4903 hypothetical protein.
  
 0.949
Mmc1_3258
PFAM: Cadherin; SMART: Dystroglycan-type cadherin domain protein; KEGG: rba:RB886 fat protein-possibly involved in cell-cell attachment.
  
 0.949
Mmc1_0636
SMART: helicase c2; DEAD-like helicases-like; KEGG: dar:Daro_1779 helicase c2:DEAD/DEAH box helicase, N-terminal.
   
 0.904
recA
RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.862
Mmc1_0485
KEGG: psb:Psyr_3804 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like.
  
 0.855
Mmc1_1442
KEGG: mca:MCA1868 ATP-dependent DNA helicase RecQ; TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like.
  
 0.855
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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