STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_3605TIGRFAM: MJ0042 family finger-like protein; KEGG: sdn:Sden_1485 AAA ATPase containing von Willebrand factor type A (vWA) domain-like protein. (1244 aa)    
Predicted Functional Partners:
Mmc1_0877
KEGG: rfr:Rfer_3635 cytochrome c family protein.
   
 
 0.638
Mmc1_0421
PFAM: Cadherin; SMART: Dystroglycan-type cadherin domain protein; KEGG: mag:amb3277 RTX toxins and related Ca2+-binding protein.
 
 
 0.525
Mmc1_1152
TIGRFAM: putative outer membrane adhesin like proteiin; KEGG: pub:SAR11_0932 hypothetical protein.
  
 
 0.460
Mmc1_1615
DNA translocase FtsK; PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: jan:Jann_0428 cell divisionFtsK/SpoIIIE.
  
 
 0.459
Mmc1_3613
KEGG: mba:Mbar_A3646 hypothetical protein.
  
 
 0.456
Mmc1_0168
Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
  
 0.417
Mmc1_2196
PFAM: Hemolysin-type calcium-binding region; glycosyl hydrolase, BNR repeat-containing protein; Haemagluttinin repeat-containing protein; KEGG: cch:Cag_0616 parallel beta-helix repeat.
  
  
 0.411
secY
Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.
    
 
 0.404
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
       0.400
Mmc1_3607
Cell division protein FtsX; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
       0.400
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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