STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_3711PFAM: protein kinase; Sporulation domain protein; SMART: serine/threonine protein kinase; KEGG: mpa:MAP1049c PknE. (1143 aa)    
Predicted Functional Partners:
Mmc1_3143
SMART: protein phosphatase 2C domain protein; KEGG: ade:Adeh_3691 serine/threonine phosphatase.
 
 
 0.900
Mmc1_3142
PFAM: Forkhead-associated protein; adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: reu:Reut_B4853 adenylyl cyclase class-3/4/guanylyl cyclase.
 
 
 
 0.673
Mmc1_1951
PFAM: protein kinase; Sel1 domain protein repeat-containing protein; SMART: serine/threonine protein kinase; KEGG: nmu:Nmul_A0104 Sel1-like repeat.
 
     0.607
Mmc1_2112
Cache sensor hybrid histidine kinase; PFAM: response regulator receiver; GAF domain protein; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: cvi:CV1579 probable two-component hybrid sensor and regulator.
   
 
 0.542
Mmc1_3037
RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG: lic:LIC11380 RNA polymerase sigma-28 factor.
  
 
 0.515
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
 
    0.502
Mmc1_0370
Peptidase M23B; PFAM: Peptidoglycan-binding LysM; peptidase M23B; KEGG: rru:Rru_A1767 peptidase M23B.
  
  
 0.501
Mmc1_2329
FolC bifunctional protein; KEGG: rru:Rru_A3431 folylpolyglutamate synthetase; TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetases domain protein; Mur ligase, middle domain protein.
  
    0.465
Mmc1_3271
KEGG: aba:Acid345_4059 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
   
 
 0.454
rnfA
Electron transport complex, RnfABCDGE type, A subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
   
    0.434
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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