STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Mmc1_3748KEGG: rru:Rru_A3632 hypothetical protein. (191 aa)    
Predicted Functional Partners:
Mmc1_0209
KEGG: rru:Rru_A1629 hypothetical protein.
  
     0.706
Mmc1_0809
KEGG: mag:amb1448 hypothetical protein.
  
     0.519
Mmc1_2483
PFAM: surface antigen (D15); KEGG: rru:Rru_A2099 surface antigen.
  
     0.497
Mmc1_3297
PFAM: transport-associated; SMART: Transport-associated and nodulation region, bacteria; KEGG: mag:amb4504 predicted periplasmic or secreted lipoprotein.
  
     0.491
Mmc1_2482
PFAM: protein of unknown function DUF490; KEGG: rru:Rru_A2098 protein of unknown function DUF490.
  
     0.486
Mmc1_0223
KEGG: reu:Reut_A1920 hypothetical protein.
  
     0.469
Mmc1_0208
KEGG: cch:Cag_1043 hypothetical protein.
  
     0.451
Mmc1_3749
Hypothetical protein.
       0.446
Mmc1_3659
PFAM: glycosyl transferase, group 1; KEGG: mag:amb3527 glycosyltransferase.
  
     0.409
Your Current Organism:
Magnetococcus marinus
NCBI taxonomy Id: 156889
Other names: M. marinus MC-1, Magnetococcus marinus MC-1, Magnetococcus marinus str. MC-1, Magnetococcus marinus strain MC-1, Magnetococcus sp. MC-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.