STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A316UY27BTP domain-containing protein. (682 aa)    
Predicted Functional Partners:
A0A316UIS5
WD40 repeat-like protein.
    
 0.997
A0A316ULS6
TAFII28-domain-containing protein.
    
 0.997
A0A316UNR1
TAF domain-containing protein.
    
 0.997
A0A316UYR6
Uncharacterized protein.
    
 0.997
A0A316V205
TFIID-31kDa-domain-containing protein.
   
 0.997
A0A316UHV1
TBP-domain-containing protein.
    
 0.994
A0A316UL66
Uncharacterized protein.
    
 
 0.988
A0A316UNJ9
TFIID_20kDa domain-containing protein.
   
 
 0.988
A0A316URW6
TAFII55_N domain-containing protein.
    
 
 0.988
A0A316UWU1
Transcription initiation factor TFIID subunit 10; Functions as a component of the DNA-binding general transcription factor complex TFIID and the transcription regulatory histone acetylation (HAT) complexes SAGA and SLIK. Binding of TFIID to a promoter (with or without TATA element) is the initial step in preinitiation complex (PIC) formation. TFIID plays a key role in the regulation of gene expression by RNA polymerase II through different activities such as transcription activator interaction, core promoter recognition and selectivity, TFIIA and TFIIB interaction, chromatin modificati [...]
    
 
 0.988
Your Current Organism:
Jaminaea rosea
NCBI taxonomy Id: 1569628
Other names: CBS 14051, J. rosea, Jaminaea sp. MCA 5214, Jaminaea sp. MCA5214, MCA 5214
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